NP Draft 6
Joanna Tang
4/12/2021
1. Is sustained weeding effort a successful long-term restoration strategy?
1a. How does total exotic percent cover change with time since restoration?
Hypothesis: If sustained weeding (routine weed-whacking, monthly hand-weeding) is successful, total exotic cover will remain low.
Results: Significant increase in total exotic percent cover after year 4 – due to increase in exotics in transition and upland zones.
1b. How does exotic diversity change with time since restoration?
Hypothesis: If sustained weeding (routine weed-whacking, monthly hand-weeding) is successful, exotic diversity will remain low.
Results: No significant change in Shannon’s Index of exotic community.
1c. Is there a threshold (# of years) after which exotic abundance increases?
Hypothesis: We will see increased exotic species percent cover and diversity with increased time since restoration due to reinvasion.
1d. Do pools converge on the same exotic community composition over time?
Hypothesis: Pools that are restored in the same way will converge on the same exotic community over time.
Results: Sig difference in exotic community across age (perMANOVA p = 0.001) – community changes at year 4
## Square root transformation
## Wisconsin double standardization
## Run 0 stress 0.0001864372
## Run 1 stress 0.0001940898
## ... Procrustes: rmse 0.0001413091 max resid 0.001737243
## ... Similar to previous best
## Run 2 stress 0.0001747207
## ... New best solution
## ... Procrustes: rmse 9.883458e-05 max resid 0.001582182
## ... Similar to previous best
## Run 3 stress 0.0001947688
## ... Procrustes: rmse 7.429055e-05 max resid 0.001142339
## ... Similar to previous best
## Run 4 stress 0.0002100222
## ... Procrustes: rmse 8.263693e-05 max resid 0.001395285
## ... Similar to previous best
## Run 5 stress 0.0001817826
## ... Procrustes: rmse 9.477926e-05 max resid 0.001460074
## ... Similar to previous best
## Run 6 stress 0.0002395607
## ... Procrustes: rmse 0.0001201268 max resid 0.001820223
## ... Similar to previous best
## Run 7 stress 0.0002113282
## ... Procrustes: rmse 0.0001294745 max resid 0.001799652
## ... Similar to previous best
## Run 8 stress 0.0002418854
## ... Procrustes: rmse 0.0001110478 max resid 0.001665338
## ... Similar to previous best
## Run 9 stress 0.0001982828
## ... Procrustes: rmse 0.0001380073 max resid 0.001538979
## ... Similar to previous best
## Run 10 stress 0.0001907099
## ... Procrustes: rmse 9.423115e-05 max resid 0.00148163
## ... Similar to previous best
## Run 11 stress 0.0002083626
## ... Procrustes: rmse 0.000151221 max resid 0.001594593
## ... Similar to previous best
## Run 12 stress 0.0001790781
## ... Procrustes: rmse 0.0001153779 max resid 0.001214111
## ... Similar to previous best
## Run 13 stress 0.0002211788
## ... Procrustes: rmse 6.236132e-05 max resid 0.0006707682
## ... Similar to previous best
## Run 14 stress 0.0002250545
## ... Procrustes: rmse 0.0001527055 max resid 0.002232738
## ... Similar to previous best
## Run 15 stress 0.0002258319
## ... Procrustes: rmse 0.0001027895 max resid 0.001072123
## ... Similar to previous best
## Run 16 stress 0.0001771739
## ... Procrustes: rmse 0.0001365836 max resid 0.002156664
## ... Similar to previous best
## Run 17 stress 0.000228246
## ... Procrustes: rmse 8.875907e-05 max resid 0.000987312
## ... Similar to previous best
## Run 18 stress 0.0002098695
## ... Procrustes: rmse 5.664803e-05 max resid 0.0009609022
## ... Similar to previous best
## Run 19 stress 0.0002166131
## ... Procrustes: rmse 0.0001197874 max resid 0.00144846
## ... Similar to previous best
## Run 20 stress 0.0002308734
## ... Procrustes: rmse 0.0001032019 max resid 0.001749807
## ... Similar to previous best
## *** Solution reached
1e. Is the whole community changing?
Hypothesis: If restoration was successful, then the community should be in stable equilibrium.
Results: Sig difference in community across age (perMANOVA p = 0.001) – community changes at year 6
## Square root transformation
## Wisconsin double standardization
## Run 0 stress 0.1907531
## Run 1 stress 0.1872286
## ... New best solution
## ... Procrustes: rmse 0.02889939 max resid 0.07581456
## Run 2 stress 0.1859577
## ... New best solution
## ... Procrustes: rmse 0.004448033 max resid 0.08832582
## Run 3 stress 0.1844818
## ... New best solution
## ... Procrustes: rmse 0.004269266 max resid 0.08041654
## Run 4 stress 0.1844645
## ... New best solution
## ... Procrustes: rmse 0.001533045 max resid 0.03342935
## Run 5 stress 0.1857791
## Run 6 stress 0.1872179
## Run 7 stress 0.1896821
## Run 8 stress 0.1884414
## Run 9 stress 0.1895438
## Run 10 stress 0.1857354
## Run 11 stress 0.1843237
## ... New best solution
## ... Procrustes: rmse 0.00276945 max resid 0.0639099
## Run 12 stress 0.190858
## Run 13 stress 0.1843497
## ... Procrustes: rmse 0.002437602 max resid 0.0485997
## Run 14 stress 0.190749
## Run 15 stress 0.1871542
## Run 16 stress 0.1895527
## Run 17 stress 0.1844739
## ... Procrustes: rmse 0.003201429 max resid 0.06413912
## Run 18 stress 0.1860205
## Run 19 stress 0.1859435
## Run 20 stress 0.188494
## Run 21 stress 0.1872231
## Run 22 stress 0.1844741
## ... Procrustes: rmse 0.003155487 max resid 0.06408565
## Run 23 stress 0.1872462
## Run 24 stress 0.1858353
## Run 25 stress 0.1872999
## Run 26 stress 0.1857324
## Run 27 stress 0.1906174
## Run 28 stress 0.1843352
## ... Procrustes: rmse 0.0005847163 max resid 0.01167817
## Run 29 stress 0.187266
## Run 30 stress 0.1843158
## ... New best solution
## ... Procrustes: rmse 0.0007426089 max resid 0.008058621
## ... Similar to previous best
## *** Solution reached
1f. Is the native community changing?
Hypothesis: If restoration methods are the same, pools will converge on the same native community.
Results: Total native percent cover stable after sig increase after year 2 (ANOVA F(7) = 5.65, p << 0.001), but Shannon’s Index of native community sig decreased after year 7 (ANOVA F(7) = 2.051, p = 0.0474)
## Square root transformation
## Wisconsin double standardization
## Run 0 stress 0.1197204
## Run 1 stress 0.1211792
## Run 2 stress 0.1235704
## Run 3 stress 0.1197455
## ... Procrustes: rmse 0.001894166 max resid 0.03688743
## Run 4 stress 0.1205058
## Run 5 stress 0.1204221
## Run 6 stress 0.1242693
## Run 7 stress 0.1210847
## Run 8 stress 0.1200324
## ... Procrustes: rmse 0.004194719 max resid 0.06971318
## Run 9 stress 0.1199626
## ... Procrustes: rmse 0.003886138 max resid 0.06864863
## Run 10 stress 0.1205661
## Run 11 stress 0.1197033
## ... New best solution
## ... Procrustes: rmse 0.001609616 max resid 0.02931779
## Run 12 stress 0.1200261
## ... Procrustes: rmse 0.0043121 max resid 0.07008103
## Run 13 stress 0.1198867
## ... Procrustes: rmse 0.003372211 max resid 0.06731215
## Run 14 stress 0.1259998
## Run 15 stress 0.1197095
## ... Procrustes: rmse 0.0005405538 max resid 0.01075768
## Run 16 stress 0.119719
## ... Procrustes: rmse 0.0007735572 max resid 0.0136245
## Run 17 stress 0.1199046
## ... Procrustes: rmse 0.00351352 max resid 0.06932825
## Run 18 stress 0.1206437
## Run 19 stress 0.1207161
## Run 20 stress 0.1205759
## Run 21 stress 0.1203746
## Run 22 stress 0.1203426
## Run 23 stress 0.1204949
## Run 24 stress 0.1199751
## ... Procrustes: rmse 0.003481115 max resid 0.06501137
## Run 25 stress 0.1199084
## ... Procrustes: rmse 0.003324065 max resid 0.07056513
## Run 26 stress 0.1197629
## ... Procrustes: rmse 0.00231103 max resid 0.0371388
## Run 27 stress 0.1277274
## Run 28 stress 0.125201
## Run 29 stress 0.1197724
## ... Procrustes: rmse 0.002436159 max resid 0.0372729
## Run 30 stress 0.1203898
## Run 31 stress 0.120487
## Run 32 stress 0.1260531
## Run 33 stress 0.1246969
## Run 34 stress 0.1199732
## ... Procrustes: rmse 0.004057259 max resid 0.07003614
## Run 35 stress 0.1206595
## Run 36 stress 0.123995
## Run 37 stress 0.1197031
## ... New best solution
## ... Procrustes: rmse 0.0003644298 max resid 0.003144512
## ... Similar to previous best
## *** Solution reached
1g. How does this actively managed site compare to passive management?
Hypothesis: Actively managed site will change the community.
Results: North Parcel sig different from Del Sol communities (both overall and just exotics)
## Square root transformation
## Wisconsin double standardization
## Run 0 stress 0.140143
## Run 1 stress 0.1401449
## ... Procrustes: rmse 0.0009260093 max resid 0.01658437
## Run 2 stress 0.1401428
## ... New best solution
## ... Procrustes: rmse 0.001113462 max resid 0.01971245
## Run 3 stress 0.1401446
## ... Procrustes: rmse 0.001323612 max resid 0.02376204
## Run 4 stress 0.1401329
## ... New best solution
## ... Procrustes: rmse 0.001179841 max resid 0.02183282
## Run 5 stress 0.151906
## Run 6 stress 0.1401505
## ... Procrustes: rmse 0.0009819621 max resid 0.0207413
## Run 7 stress 0.140144
## ... Procrustes: rmse 0.0004632886 max resid 0.001979062
## ... Similar to previous best
## Run 8 stress 0.1401452
## ... Procrustes: rmse 0.001117422 max resid 0.01889823
## Run 9 stress 0.1401399
## ... Procrustes: rmse 0.0008848728 max resid 0.01959073
## Run 10 stress 0.1401427
## ... Procrustes: rmse 0.0007382106 max resid 0.01291283
## Run 11 stress 0.1401397
## ... Procrustes: rmse 0.001146594 max resid 0.02097023
## Run 12 stress 0.140131
## ... New best solution
## ... Procrustes: rmse 0.0004289686 max resid 0.00753713
## ... Similar to previous best
## Run 13 stress 0.1401351
## ... Procrustes: rmse 0.000947123 max resid 0.01611734
## Run 14 stress 0.1401357
## ... Procrustes: rmse 0.0007227669 max resid 0.01324211
## Run 15 stress 0.1401465
## ... Procrustes: rmse 0.0007139255 max resid 0.005756169
## ... Similar to previous best
## Run 16 stress 0.1401466
## ... Procrustes: rmse 0.0009693103 max resid 0.0205707
## Run 17 stress 0.140152
## ... Procrustes: rmse 0.001203002 max resid 0.02127813
## Run 18 stress 0.1401472
## ... Procrustes: rmse 0.001203796 max resid 0.02076578
## Run 19 stress 0.1401496
## ... Procrustes: rmse 0.001151758 max resid 0.0208782
## Run 20 stress 0.1401464
## ... Procrustes: rmse 0.0009801462 max resid 0.02068166
## *** Solution reached
## Square root transformation
## Wisconsin double standardization
## Run 0 stress 0.0002493451
## Run 1 stress 0.0003104967
## ... Procrustes: rmse 0.0001237347 max resid 0.001973227
## ... Similar to previous best
## Run 2 stress 0.0002860673
## ... Procrustes: rmse 5.20922e-05 max resid 0.0007903145
## ... Similar to previous best
## Run 3 stress 0.0002956408
## ... Procrustes: rmse 0.0001232495 max resid 0.001485577
## ... Similar to previous best
## Run 4 stress 0.0002736536
## ... Procrustes: rmse 0.0001313674 max resid 0.002142802
## ... Similar to previous best
## Run 5 stress 0.0002568492
## ... Procrustes: rmse 0.0001241286 max resid 0.001405572
## ... Similar to previous best
## Run 6 stress 0.000261039
## ... Procrustes: rmse 0.0001116023 max resid 0.001799231
## ... Similar to previous best
## Run 7 stress 0.0002818159
## ... Procrustes: rmse 9.90803e-05 max resid 0.001476145
## ... Similar to previous best
## Run 8 stress 0.0002956183
## ... Procrustes: rmse 0.0001327594 max resid 0.002586687
## ... Similar to previous best
## Run 9 stress 0.000296899
## ... Procrustes: rmse 0.0001189641 max resid 0.001881227
## ... Similar to previous best
## Run 10 stress 0.0003074989
## ... Procrustes: rmse 0.0001656933 max resid 0.002132094
## ... Similar to previous best
## Run 11 stress 0.0002748882
## ... Procrustes: rmse 0.0001198919 max resid 0.001391792
## ... Similar to previous best
## Run 12 stress 0.0003306824
## ... Procrustes: rmse 0.0001209585 max resid 0.001397429
## ... Similar to previous best
## Run 13 stress 0.000293399
## ... Procrustes: rmse 0.0001261745 max resid 0.001564076
## ... Similar to previous best
## Run 14 stress 0.0002627465
## ... Procrustes: rmse 6.90775e-05 max resid 0.001086668
## ... Similar to previous best
## Run 15 stress 0.0002704004
## ... Procrustes: rmse 0.0001073318 max resid 0.00201955
## ... Similar to previous best
## Run 16 stress 0.0002648141
## ... Procrustes: rmse 0.0001484116 max resid 0.002022527
## ... Similar to previous best
## Run 17 stress 0.0003220479
## ... Procrustes: rmse 0.0001042372 max resid 0.001183085
## ... Similar to previous best
## Run 18 stress 0.0003228854
## ... Procrustes: rmse 0.0001516643 max resid 0.002826584
## ... Similar to previous best
## Run 19 stress 0.0002599293
## ... Procrustes: rmse 0.0001690516 max resid 0.002068787
## ... Similar to previous best
## Run 20 stress 0.0003161539
## ... Procrustes: rmse 0.000191471 max resid 0.003405525
## ... Similar to previous best
## *** Solution reached2. What environmental filters can be manipulated to decrease exotics?
2a. How does the seedbank compare to the aboveground cover?
H1: If exotic species are coming up in above-ground monitoring that are not found in below-ground seedbank diversity, then seeds are blowing in from surrounding invaded matrix. H2: If native species are in the seedbank but are not found in above-ground monitoring, then an environmental filter is preventing them from germinating, despite sustained weeding effort.
Results: Exotic seedbank communities sig different from exotic above-ground communities (perMANOVA p = 0.001)
## Run 0 stress 0.000232349
## Run 1 stress 0.0001820974
## ... New best solution
## ... Procrustes: rmse 0.0001430266 max resid 0.002300553
## ... Similar to previous best
## Run 2 stress 0.0002282422
## ... Procrustes: rmse 9.839991e-05 max resid 0.00110316
## ... Similar to previous best
## Run 3 stress 0.0002370712
## ... Procrustes: rmse 7.938828e-05 max resid 0.0008129308
## ... Similar to previous best
## Run 4 stress 0.000234125
## ... Procrustes: rmse 0.0001268356 max resid 0.001903008
## ... Similar to previous best
## Run 5 stress 0.0002235591
## ... Procrustes: rmse 9.140641e-05 max resid 0.001114226
## ... Similar to previous best
## Run 6 stress 0.0002649854
## ... Procrustes: rmse 7.723169e-05 max resid 0.0007855207
## ... Similar to previous best
## Run 7 stress 0.0002634111
## ... Procrustes: rmse 9.022907e-05 max resid 0.001257786
## ... Similar to previous best
## Run 8 stress 0.0002450565
## ... Procrustes: rmse 0.0001118921 max resid 0.001208882
## ... Similar to previous best
## Run 9 stress 0.0002390008
## ... Procrustes: rmse 0.0001540934 max resid 0.0027948
## ... Similar to previous best
## Run 10 stress 0.0002450104
## ... Procrustes: rmse 7.33663e-05 max resid 0.001300984
## ... Similar to previous best
## Run 11 stress 0.0002379301
## ... Procrustes: rmse 0.000142937 max resid 0.002312271
## ... Similar to previous best
## Run 12 stress 0.0002775694
## ... Procrustes: rmse 0.0001467792 max resid 0.002655063
## ... Similar to previous best
## Run 13 stress 0.0002602138
## ... Procrustes: rmse 0.0001443887 max resid 0.00232379
## ... Similar to previous best
## Run 14 stress 0.000234726
## ... Procrustes: rmse 0.0001124845 max resid 0.001550216
## ... Similar to previous best
## Run 15 stress 0.0002229657
## ... Procrustes: rmse 8.771249e-05 max resid 0.001024053
## ... Similar to previous best
## Run 16 stress 0.0002185355
## ... Procrustes: rmse 6.948491e-05 max resid 0.001205662
## ... Similar to previous best
## Run 17 stress 0.0002878713
## ... Procrustes: rmse 0.0001633718 max resid 0.002667143
## ... Similar to previous best
## Run 18 stress 0.0002214081
## ... Procrustes: rmse 7.445224e-05 max resid 0.0009573464
## ... Similar to previous best
## Run 19 stress 0.0002349317
## ... Procrustes: rmse 7.312424e-05 max resid 0.0008458798
## ... Similar to previous best
## Run 20 stress 0.0002469862
## ... Procrustes: rmse 6.431415e-05 max resid 0.001135779
## ... Similar to previous best
## *** Solution reached
2b. Does active management result in a different exotic community?
Hypothesis: Actively managed site will change the community.
Results: North Parcel sig different from Del Sol communities (both with all seedbank data and all seedbank and percent cover data)
## Wisconsin double standardization
## Run 0 stress 0.1733764
## Run 1 stress 0.2016598
## Run 2 stress 0.1825892
## Run 3 stress 0.2131632
## Run 4 stress 0.1712738
## ... New best solution
## ... Procrustes: rmse 0.03547049 max resid 0.1073255
## Run 5 stress 0.1756276
## Run 6 stress 0.1925607
## Run 7 stress 0.2114841
## Run 8 stress 0.1915171
## Run 9 stress 0.1702988
## ... New best solution
## ... Procrustes: rmse 0.02513159 max resid 0.09712359
## Run 10 stress 0.1767449
## Run 11 stress 0.2024262
## Run 12 stress 0.1826488
## Run 13 stress 0.209214
## Run 14 stress 0.18104
## Run 15 stress 0.1736347
## Run 16 stress 0.1877204
## Run 17 stress 0.1814928
## Run 18 stress 0.1849816
## Run 19 stress 0.1706811
## ... Procrustes: rmse 0.009691182 max resid 0.04891866
## Run 20 stress 0.1885768
## Run 21 stress 0.1813054
## Run 22 stress 0.1701714
## ... New best solution
## ... Procrustes: rmse 0.006758717 max resid 0.03757545
## Run 23 stress 0.1851699
## Run 24 stress 0.176436
## Run 25 stress 0.174927
## Run 26 stress 0.1865154
## Run 27 stress 0.1802802
## Run 28 stress 0.1805859
## Run 29 stress 0.1743852
## Run 30 stress 0.1742185
## Run 31 stress 0.1738441
## Run 32 stress 0.2033024
## Run 33 stress 0.1770268
## Run 34 stress 0.1897039
## Run 35 stress 0.2031434
## Run 36 stress 0.2050624
## Run 37 stress 0.1736329
## Run 38 stress 0.1731068
## Run 39 stress 0.1748391
## Run 40 stress 0.1731055
## Run 41 stress 0.1731833
## Run 42 stress 0.1757922
## Run 43 stress 0.1741997
## Run 44 stress 0.1828308
## Run 45 stress 0.1867416
## Run 46 stress 0.1728622
## Run 47 stress 0.1872247
## Run 48 stress 0.17338
## Run 49 stress 0.1814606
## Run 50 stress 0.1810412
## Run 51 stress 0.1759519
## Run 52 stress 0.2073453
## Run 53 stress 0.1909302
## Run 54 stress 0.1919209
## Run 55 stress 0.1873494
## Run 56 stress 0.1919813
## Run 57 stress 0.1921356
## Run 58 stress 0.1806915
## Run 59 stress 0.1925388
## Run 60 stress 0.200757
## Run 61 stress 0.1959907
## Run 62 stress 0.2096362
## Run 63 stress 0.1737019
## Run 64 stress 0.1791224
## Run 65 stress 0.2116031
## Run 66 stress 0.201161
## Run 67 stress 0.1766697
## Run 68 stress 0.1747328
## Run 69 stress 0.1730899
## Run 70 stress 0.1840414
## Run 71 stress 0.1702163
## ... Procrustes: rmse 0.002583475 max resid 0.01473866
## Run 72 stress 0.1771323
## Run 73 stress 0.1709486
## Run 74 stress 0.1755095
## Run 75 stress 0.1887825
## Run 76 stress 0.1761892
## Run 77 stress 0.1960429
## Run 78 stress 0.1744203
## Run 79 stress 0.1741776
## Run 80 stress 0.1768261
## Run 81 stress 0.1806334
## Run 82 stress 0.2044272
## Run 83 stress 0.2033158
## Run 84 stress 0.177027
## Run 85 stress 0.1869613
## Run 86 stress 0.1861871
## Run 87 stress 0.2108588
## Run 88 stress 0.178314
## Run 89 stress 0.1888635
## Run 90 stress 0.173775
## Run 91 stress 0.1814511
## Run 92 stress 0.1742767
## Run 93 stress 0.1746914
## Run 94 stress 0.2066483
## Run 95 stress 0.1753038
## Run 96 stress 0.1762708
## Run 97 stress 0.1982649
## Run 98 stress 0.189412
## Run 99 stress 0.1913047
## Run 100 stress 0.1836526
## Run 101 stress 0.1729805
## Run 102 stress 0.1933719
## Run 103 stress 0.177068
## Run 104 stress 0.1705441
## ... Procrustes: rmse 0.009678373 max resid 0.05072775
## Run 105 stress 0.1842077
## Run 106 stress 0.2059944
## Run 107 stress 0.1975918
## Run 108 stress 0.1740914
## Run 109 stress 0.2076894
## Run 110 stress 0.1739274
## Run 111 stress 0.1756985
## Run 112 stress 0.1926419
## Run 113 stress 0.1953204
## Run 114 stress 0.1918898
## Run 115 stress 0.1844516
## Run 116 stress 0.2063903
## Run 117 stress 0.1733948
## Run 118 stress 0.1931364
## Run 119 stress 0.1741488
## Run 120 stress 0.2042986
## Run 121 stress 0.1857585
## Run 122 stress 0.1775115
## Run 123 stress 0.1731879
## Run 124 stress 0.1868488
## Run 125 stress 0.1845311
## Run 126 stress 0.1753579
## Run 127 stress 0.1933776
## Run 128 stress 0.1926899
## Run 129 stress 0.1728622
## Run 130 stress 0.176069
## Run 131 stress 0.1899127
## Run 132 stress 0.1771486
## Run 133 stress 0.1736138
## Run 134 stress 0.2192776
## Run 135 stress 0.2065213
## Run 136 stress 0.1944162
## Run 137 stress 0.1751954
## Run 138 stress 0.1894884
## Run 139 stress 0.1708882
## Run 140 stress 0.1953439
## Run 141 stress 0.2001331
## Run 142 stress 0.1947132
## Run 143 stress 0.1930439
## Run 144 stress 0.1740495
## Run 145 stress 0.170583
## ... Procrustes: rmse 0.01015338 max resid 0.04830655
## Run 146 stress 0.1706445
## ... Procrustes: rmse 0.01110116 max resid 0.04707504
## Run 147 stress 0.1702159
## ... Procrustes: rmse 0.002557924 max resid 0.01463494
## Run 148 stress 0.1714268
## Run 149 stress 0.1863175
## Run 150 stress 0.1889723
## Run 151 stress 0.1890526
## Run 152 stress 0.1932767
## Run 153 stress 0.1729786
## Run 154 stress 0.186062
## Run 155 stress 0.1748511
## Run 156 stress 0.2050218
## Run 157 stress 0.2082764
## Run 158 stress 0.1728337
## Run 159 stress 0.2037059
## Run 160 stress 0.1897468
## Run 161 stress 0.1734018
## Run 162 stress 0.1767713
## Run 163 stress 0.2051432
## Run 164 stress 0.2007809
## Run 165 stress 0.2040309
## Run 166 stress 0.1995039
## Run 167 stress 0.1745444
## Run 168 stress 0.1754204
## Run 169 stress 0.1743481
## Run 170 stress 0.2074194
## Run 171 stress 0.1927411
## Run 172 stress 0.1713814
## Run 173 stress 0.2088491
## Run 174 stress 0.1887718
## Run 175 stress 0.186664
## Run 176 stress 0.1925681
## Run 177 stress 0.1740655
## Run 178 stress 0.1762924
## Run 179 stress 0.218104
## Run 180 stress 0.2139098
## Run 181 stress 0.1962638
## Run 182 stress 0.1765568
## Run 183 stress 0.1737806
## Run 184 stress 0.1933985
## Run 185 stress 0.1761172
## Run 186 stress 0.2001847
## Run 187 stress 0.1926294
## Run 188 stress 0.1708859
## Run 189 stress 0.1949873
## Run 190 stress 0.1891524
## Run 191 stress 0.1753585
## Run 192 stress 0.1733532
## Run 193 stress 0.1869561
## Run 194 stress 0.173634
## Run 195 stress 0.190953
## Run 196 stress 0.1731141
## Run 197 stress 0.1960291
## Run 198 stress 0.1733478
## Run 199 stress 0.1728623
## Run 200 stress 0.170544
## ... Procrustes: rmse 0.009614048 max resid 0.04987122
## Run 201 stress 0.2034679
## Run 202 stress 0.1783124
## Run 203 stress 0.1846246
## Run 204 stress 0.2034906
## Run 205 stress 0.1707538
## Run 206 stress 0.1929609
## Run 207 stress 0.2067438
## Run 208 stress 0.1743704
## Run 209 stress 0.1760088
## Run 210 stress 0.1712481
## Run 211 stress 0.1812245
## Run 212 stress 0.1743911
## Run 213 stress 0.1787431
## Run 214 stress 0.189581
## Run 215 stress 0.173907
## Run 216 stress 0.1737928
## Run 217 stress 0.1978088
## Run 218 stress 0.1736612
## Run 219 stress 0.1706679
## ... Procrustes: rmse 0.0116949 max resid 0.05016078
## Run 220 stress 0.1750336
## Run 221 stress 0.1933081
## Run 222 stress 0.1983945
## Run 223 stress 0.1873235
## Run 224 stress 0.1705209
## ... Procrustes: rmse 0.008918441 max resid 0.04684224
## Run 225 stress 0.1973474
## Run 226 stress 0.1823818
## Run 227 stress 0.1766546
## Run 228 stress 0.1967084
## Run 229 stress 0.2084294
## Run 230 stress 0.1972191
## Run 231 stress 0.1712647
## Run 232 stress 0.1897044
## Run 233 stress 0.1810121
## Run 234 stress 0.1861928
## Run 235 stress 0.1706445
## ... Procrustes: rmse 0.01114484 max resid 0.04720521
## Run 236 stress 0.1752665
## Run 237 stress 0.1868476
## Run 238 stress 0.1770838
## Run 239 stress 0.1887326
## Run 240 stress 0.1767523
## Run 241 stress 0.1734685
## Run 242 stress 0.1710972
## Run 243 stress 0.1932074
## Run 244 stress 0.1754378
## Run 245 stress 0.2033389
## Run 246 stress 0.1702159
## ... Procrustes: rmse 0.002553464 max resid 0.01469607
## Run 247 stress 0.1841576
## Run 248 stress 0.1941432
## Run 249 stress 0.1766544
## Run 250 stress 0.1705595
## ... Procrustes: rmse 0.009742777 max resid 0.04863548
## *** No convergence -- monoMDS stopping criteria:
## 250: stress ratio > sratmax
## Run 0 stress 0.0003519524
## Run 1 stress 0.0003504315
## ... New best solution
## ... Procrustes: rmse 0.0002541612 max resid 0.003437255
## ... Similar to previous best
## Run 2 stress 0.0003389148
## ... New best solution
## ... Procrustes: rmse 0.0002163799 max resid 0.00257989
## ... Similar to previous best
## Run 3 stress 0.00032611
## ... New best solution
## ... Procrustes: rmse 0.0002708335 max resid 0.003236125
## ... Similar to previous best
## Run 4 stress 0.0003378828
## ... Procrustes: rmse 0.0001854713 max resid 0.003153751
## ... Similar to previous best
## Run 5 stress 0.0003992929
## ... Procrustes: rmse 0.000134052 max resid 0.001714248
## ... Similar to previous best
## Run 6 stress 0.0003056084
## ... New best solution
## ... Procrustes: rmse 0.0001395105 max resid 0.001884434
## ... Similar to previous best
## Run 7 stress 0.0004022789
## ... Procrustes: rmse 9.359401e-05 max resid 0.001270421
## ... Similar to previous best
## Run 8 stress 0.0003122231
## ... Procrustes: rmse 0.0001346069 max resid 0.001591705
## ... Similar to previous best
## Run 9 stress 0.0003836744
## ... Procrustes: rmse 0.0002539098 max resid 0.005110854
## ... Similar to previous best
## Run 10 stress 0.0003912929
## ... Procrustes: rmse 0.0001487384 max resid 0.001782323
## ... Similar to previous best
## Run 11 stress 0.0003606628
## ... Procrustes: rmse 0.0001312615 max resid 0.001587534
## ... Similar to previous best
## Run 12 stress 0.0002851427
## ... New best solution
## ... Procrustes: rmse 0.0001209941 max resid 0.002294198
## ... Similar to previous best
## Run 13 stress 0.0002879428
## ... Procrustes: rmse 0.0001022843 max resid 0.001693297
## ... Similar to previous best
## Run 14 stress 0.0003770013
## ... Procrustes: rmse 0.0002570975 max resid 0.005100019
## ... Similar to previous best
## Run 15 stress 0.0003561592
## ... Procrustes: rmse 4.883992e-05 max resid 0.0004910848
## ... Similar to previous best
## Run 16 stress 0.0003236326
## ... Procrustes: rmse 9.137825e-05 max resid 0.001487117
## ... Similar to previous best
## Run 17 stress 0.0003035541
## ... Procrustes: rmse 0.000185986 max resid 0.003177981
## ... Similar to previous best
## Run 18 stress 0.0003145829
## ... Procrustes: rmse 0.0002473574 max resid 0.004793174
## ... Similar to previous best
## Run 19 stress 0.0003745728
## ... Procrustes: rmse 0.0001321171 max resid 0.002436761
## ... Similar to previous best
## Run 20 stress 0.0002974172
## ... Procrustes: rmse 6.972155e-05 max resid 0.001179452
## ... Similar to previous best
## *** Solution reached
